Difference between revisions of "Installation/Linux/OpenFOAM-dev/CentOS SL RHEL"

From OpenFOAMWiki
m (CentOS 6.6: fixed typo)
(Revamping instructions)
 
(39 intermediate revisions by the same user not shown)
Line 13: Line 13:
 
If you do not yet feel comfortable using Linux, then perhaps you better first read the page [[Installation/Working with the Shell|Working with the Shell]] and train a bit with the shell/terminal environments, so you can have a better perception of the steps shown below.
 
If you do not yet feel comfortable using Linux, then perhaps you better first read the page [[Installation/Working with the Shell|Working with the Shell]] and train a bit with the shell/terminal environments, so you can have a better perception of the steps shown below.
  
__FORCETOC__
+
For the most part you have the following choices on how to install OpenFOAM-dev:
__TOC__
+
* You can install from source, by either:
 +
** Following the official instructions from here: [http://openfoam.org/download/source/ OpenFOAM Source Repository]
 +
** Or by following the detailed step-by-step instructions provided in the following pages...
  
= ''Copy-Paste'' steps =
 
  
A few notes before you start copy-pasting:
+
Here are the Ubuntu versions for which the community has already written step-by-step OpenFOAM-dev installation instructions:
 
+
{{subpages|Installation/Linux/OpenFOAM-dev/CentOS_SL_RHEL/}}
# Lines that start with <tt>#</tt> don't have to be ''copy-pasted''. They are just comments to let you know what's going on.
+
# One wrong character is enough for breaking this guide, so make sure you can read the characters properly or that the installed language system does not break the copied characters!
+
 
+
== CentOS 6.6 ==
+
 
+
<span style="font-size:180%">'''WARNING: These instructions are currently being written and under testing!'''</span>
+
 
+
'''Discussion thread where you can ask questions about these steps''': ''None at the moment...''
+
 
+
Steps:
+
<ol>
+
{{Installation/Linux/SwitchToRoot}}
+
 
+
<li>Install the necessary packages:
+
<bash>yum groupinstall 'Development Tools'
+
yum install openmpi openmpi-devel zlib-devel texinfo gstreamer-plugins-base-devel \
+
libXext-devel libGLU-devel libXt-devel libXrender-devel libXinerama-devel libpng-devel \
+
libXrandr-devel libXi-devel libXft-devel libjpeg-turbo-devel libXcursor-devel \
+
readline-devel ncurses-devel python python-devel
+
 
+
#This one is useful, but not crucial
+
yum upgrade</bash>
+
</li>
+
 
+
{{Installation/Linux/ExitRoot}}
+
 
+
<li>Start a new terminal. This is because you'll need a fully refreshed shell.</li>
+
 
+
<li>Download and unpack (here you can copy-paste all in single go):
+
<bash>#OpenFOAM downloading and installation
+
cd ~
+
mkdir OpenFOAM
+
cd OpenFOAM
+
git clone https://github.com/OpenFOAM/OpenFOAM-dev.git
+
git clone https://github.com/OpenFOAM/ThirdParty-dev.git
+
</bash>
+
But we will now have to download a few more of the necessary packages for the {{tt|ThirdParty-dev}} folder:
+
<ol>
+
<li>First, we need to prepare for the downloads:
+
<bash>cd ThirdParty-dev
+
mkdir download
+
</bash>
+
</li>
+
 
+
<li>Now, we need to download the essential source code packages for these instructions you are following (the links are from the file {{tt|README.org}}):
+
<bash>wget -P download  http://www.paraview.org/files/v4.3/ParaView-v4.3.1-source.tar.gz
+
wget -P download http://www.cmake.org/files/v3.2/cmake-3.2.1.tar.gz
+
wget -P download https://gforge.inria.fr/frs/download.php/file/34099/scotch_6.0.3.tar.gz
+
wget -P download https://gforge.inria.fr/frs/download.php/file/34703/CGAL-4.6.tar.bz2
+
wget -P download http://sourceforge.net/projects/boost/files/boost/1.55.0/boost_1_55_0.tar.bz2
+
</bash>
+
</li>
+
 
+
<li>Next, we need to unpack the packages we've downloaded:
+
<bash>tar -xzf download/ParaView-v4.3.1-source.tar.gz
+
tar -xzf download/cmake-3.2.1.tar.gz
+
tar -xzf download/scotch_6.0.3.tar.gz
+
tar -xjf download/CGAL-4.6.tar.bz2
+
tar -xjf download/boost_1_55_0.tar.bz2
+
</bash>
+
</li>
+
 
+
<li>And we need to correct some folder names... in this case, it's just ParaView:
+
<bash>mv ParaView-v4.3.1-source ParaView-4.3.1
+
</bash>
+
</li>
+
 
+
<li>Last but not least, the final command on this sub-list is to go back to the main {{tt|OpenFOAM}} folder:
+
<bash>cd ..
+
</bash>
+
</li>
+
</ol>
+
</li>
+
 
+
<li>A few details need to be fixed, because proceeding, which will change the default GCC version 4.8.2 to 4.8.4, as well as switching to a custom built Boost version:
+
<bash>sed -i -e 's=gcc\-4\.8\.2=gcc-4.8.4=' OpenFOAM-dev/etc/config/settings.sh
+
sed -i -e 's=boost-system=boost_1_55_0=' OpenFOAM-dev/etc/config/CGAL.sh
+
</bash>
+
</li>
+
 
+
<li>For building OpenFOAM itself, it depends on whether you have installed the i386 or x86_64 architecture of CentOS/SL/RHEL. To check this, run:
+
<bash>uname -m</bash>
+
Now, accordingly:
+
<ul {{NoIndentStyle}}>
+
<li>For i386:
+
<bash>#forcefully load Open-MPI into the environment
+
#the export command has been reported as needed due to the
+
#module not being available in a clean installation
+
module load openmpi-i386 || export PATH=$PATH:/usr/lib/openmpi/bin
+
 
+
#ignore any error messages given by the command above
+
 
+
source $HOME/OpenFOAM/OpenFOAM-dev/etc/bashrc foamCompiler=ThirdParty WM_COMPILER=Gcc48 WM_ARCH_OPTION=32
+
</bash>
+
Also, save an ''alias'' in the personal {{tt|.bashrc}} file, simply by running the following command:
+
<bash>echo "alias ofdev='module load openmpi-i386; source \$HOME/OpenFOAM/OpenFOAM-dev/etc/bashrc $FOAM_SETTINGS'" >> $HOME/.bashrc
+
</bash>
+
{{Installation/Linux/AliasNote|OpenFOAM dev|ofdev}}
+
</li>
+
 
+
<li>For x86_64, it depends on whether you need 64-bit integer support or not. But first, common to both, we will forcefully load Open-MPI into the environment (the export command has been reported as needed due to the module not being available in a clean installation):
+
<bash>module load openmpi-x86_64 || export PATH=$PATH:/usr/lib64/openmpi/bin</bash>
+
'''Note''': Ignore any error messages given by the command above.<br>
+
Now, depending on whether you need 64-bit integer support or not:
+
<ul>
+
<li>For building with the normal 32-bit integer support (maximum 2.147×10<sup>9</sup> cells, faces or points):
+
<bash>source $HOME/OpenFOAM/OpenFOAM-dev/etc/bashrc foamCompiler=ThirdParty WM_COMPILER=Gcc48
+
</bash>
+
</li>
+
<li>For building with the normal 64-bit integer support (maximum 9.22×10<sup>18</sup> cells, faces or points):
+
<bash>source $HOME/OpenFOAM/OpenFOAM-dev/etc/bashrc WM_LABEL_SIZE=64 foamCompiler=ThirdParty WM_COMPILER=Gcc48
+
</bash>
+
</li>
+
</ul>
+
 
+
Also, save an ''alias'' in the personal {{tt|.bashrc}} file, simply by running the following command:
+
<bash>echo "alias ofdev='module load openmpi-x86_64; source \$HOME/OpenFOAM/OpenFOAM-dev/etc/bashrc $FOAM_SETTINGS'" >> $HOME/.bashrc
+
</bash>
+
{{Installation/Linux/AliasNote|OpenFOAM dev|ofdev}}
+
</li>
+
</ul>
+
 
+
Note: You probably will see a message similar to this one and it's meant to do so until we've built the custom Gcc version:
+
<bash>Warning in /home/user/OpenFOAM/OpenFOAM-dev/etc/config/settings.sh:
+
    Cannot find /home/user/OpenFOAM/ThirdParty-dev/platforms/linux64/gcc-4.8.4 installation.
+
    Please install this compiler version or if you wish to use the system compiler,
+
    change the 'foamCompiler' setting to 'system'</bash>
+
</li>
+
 
+
<li>Now we'll have to get all of the scripts we'll need to build GCC and binutils (because OpenFOAM-dev requires at least GCC 4.5 and CentOS only provides GCC 4.4):
+
<bash>cd $WM_THIRD_PARTY_DIR
+
wget "https://raw.github.com/wyldckat/scripts4OpenFOAM3rdParty/master/getGcc"
+
wget "https://raw.github.com/wyldckat/ThirdParty-2.0.x/binutils/makeBinutils"
+
wget "https://raw.github.com/wyldckat/ThirdParty-2.0.x/binutils/getBinutils"
+
chmod +x get* make*
+
 
+
#we need to disable the ''multilib'' functionality, since we won't need to build both 32 and 64bit architectures.
+
sed -i -e 's=\(--with-system-zlib \)=\1--disable-multilib =' makeGcc
+
</bash>
+
</li>
+
 
+
<li>CentOS 6.6 comes with CMake 2.6.4, but ParaView 4.1.0 needs a one of the versions from the more recent CMake 2.8.x series and CGAL also needs CMake. Therefore, we'll need to do a custom build and we have to do it before we build the custom GCC+binutils (reason: [http://www.cfd-online.com/Forums/openfoam-installation/130205-paraview-4-redhat-possible.html#post478025]):
+
<bash>cd $WM_THIRD_PARTY_DIR
+
./makeCmake > mkcmake.log 2>&1
+
wmSET $FOAM_SETTINGS
+
</bash>
+
<ul><li>'''Note:''' If you've already tried building CMake and got this error message:
+
<bash>note: 'keypad' is defined in DSO /lib64/libtinfo.so.5 so try adding it to the linker command line</bash>
+
Then run:
+
<bash>mv $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_ARCH_OPTION/gcc-4.8.4 $WM_THIRD_PARTY_DIR/platforms/linux64/gcc-4.8.4.bak
+
./makeCmake > mkcmake.log 2>&1
+
mv $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_ARCH_OPTION/gcc-4.8.4.bak $WM_THIRD_PARTY_DIR/platforms/linux64/gcc-4.8.4
+
wmSET $FOAM_SETTINGS
+
</bash>
+
</li>
+
</ul>
+
</li>
+
 
+
<li>Now let's get and build Gcc 4.8.4 and company:
+
<bash>./getGcc gcc-4.8.4 gmp-5.1.2 mpfr-3.1.2 mpc-1.0.1
+
./makeGcc gcc-4.8.4 gmp-5.1.2 mpfr-3.1.2 mpc-1.0.1 > mkgcc.log 2>&1
+
wmSET $FOAM_SETTINGS</bash>
+
If it still gives you the same error message from #3, then something went wrong...
+
</li>
+
 
+
<li>Now let's get and build a custom GNU Binutils:
+
<bash>./getBinutils
+
./makeBinutils gcc-4.8.4 > mkbinutils.log 2>&1</bash>
+
</li>
+
 
+
<li>Now let's fix the Boost version in {{tt|makeCGAL}}:
+
<bash>sed -i -e 's=boost-system=boost_1_55_0=' makeCGAL
+
</bash>
+
</li>
+
 
+
<li>Now let's build CGAL, because we need to use custom options and we need the shell environment to be updated afterwards, for CGAL to be properly picked up for building OpenFOAM:
+
<bash># This next command will take a little while...
+
./makeCGAL gmp-5.1.2 mpfr-3.1.2 > mkcgal.log 2>&1
+
 
+
#update the shell environment
+
wmSET $FOAM_SETTINGS
+
</bash>
+
</li>
+
 
+
<li>CentOS 6.6 comes with Qt 4.6.2, but ParaView 4.3.1 needs at least 4.7. Therefore, we'll need to do a custom build of Qt 4.8.6:
+
<bash>cd $WM_THIRD_PARTY_DIR
+
wget "https://raw.github.com/wyldckat/scripts4OpenFOAM3rdParty/master/getQt"
+
chmod +x getQt
+
sed -i -e 's=4\.6=4.8=' -e 's=4\.8\.4=4.8.6=' -e 's=/\$major/\$tarFile=/$major/$version/$tarFile=' getQt
+
./getQt
+
 
+
./makeQt qt-4.8.6 > mkqt.log 2>&1</bash></li>
+
 
+
<li>Now, in order to build ParaView 4.3.1 that comes with OpenFOAM:
+
<ol>
+
<li>For building ParaView 4.3.1 with Python and MPI, run:
+
<bash>cd $WM_THIRD_PARTY_DIR
+
 
+
#this will take a while... somewhere between 30 minutes to 2 hours or more
+
./makeParaView4 -qmake $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/qt-4.8.6/bin/qmake -mpi -python > log.makePV 2>&1
+
</bash>
+
</li>
+
<li>Once the {{tt|makeParaView4}} script is finished running, make sure to check the contents of the file {{tt|log.makePV}} and check if there are any errors.
+
</li>
+
<li>Finally, update the shell environment:
+
<bash>wmSET $FOAM_SETTINGS</bash>
+
</li>
+
</ol>
+
</li>
+
 
+
 
+
<li>Now let's build OpenFOAM:
+
<ol>
+
<li>Go into OpenFOAM's main source folder:
+
<bash>cd $WM_PROJECT_DIR</bash>
+
</li>
+
<li>This next command will take a while... somewhere between 30 minutes to 3-6 hours:
+
<bash>./Allwmake -j 4 > make.log 2>&1</bash>
+
'''Note:''' The "4" refers to the number of cores to be used for building in parallel. In addition, the amount of RAM needed for building scales with the number of cores used, something like 1GB of RAM per core; a minimum of 1.5GB is needed for linking the libraries, which is not done in parallel.
+
</li>
+
<li>Run it a second time for getting a summary of the installation:
+
<bash>./Allwmake -j 4 > make.log 2>&1</bash>
+
'''Note:''' Technically, the build will stop as soon as the first error is found. Running a second time only makes it easier to sort through between what's already been built and where the crash occurred.
+
</li>
+
</ol>
+
</li>
+
 
+
<li>{{Installation/Linux/CheckIfAllWentWell}}</li>
+
 
+
<li>Now you can go read the User Guide: [http://www.openfoam.org/docs/user/ official OpenFOAM User Guide]</li>
+
</ol>
+
 
+
 
+
{{Installation/Linux/AliasReminder|OpenFOAM dev|ofdev}}
+
 
+
 
+
'''Discussion thread where you can ask questions about these steps''': ''None at the moment...''
+
  
 
<br>
 
<br>
 
 
 
[[Category:Installing OpenFOAM on Linux]] [[Category:Installing OpenFOAM on CentOS]]
 
[[Category:Installing OpenFOAM on Linux]] [[Category:Installing OpenFOAM on CentOS]]

Latest revision as of 10:01, 29 May 2020

Introduction

This page is dedicated to explaining how to install OpenFOAM OF Version FoundationDev.png in:

  • Community ENTerprise Operating System, aka CentOS.
  • Red Hat Enterprise Linux, aka RHEL.
  • Scientific Linux, aka SL.

In theory, all of the above follow the same versioning. Therefore, at the time this page was first written, RHEL, CentOS and SL were all at version 6.6.

Both SL and CentOS derive from RHEL, but CentFOAM is what inspired this (and other related instruction pages). Therefore, before even trying to follow the instructions on this page, try first CentFOAM.

Last but not least, RHEL uses Fedora as their bleeding edge Linux Distribution, where they test new features. This leads to very close similarities between them, e.g. RHEL 6.3 is very similar to Fedora 14; which means that whatever you can build on Fedora 14, you should also be able to build on RHEL 6.3!

If you do not yet feel comfortable using Linux, then perhaps you better first read the page Working with the Shell and train a bit with the shell/terminal environments, so you can have a better perception of the steps shown below.

For the most part you have the following choices on how to install OpenFOAM-dev:

  • You can install from source, by either:
    • Following the official instructions from here: OpenFOAM Source Repository
    • Or by following the detailed step-by-step instructions provided in the following pages...


Here are the Ubuntu versions for which the community has already written step-by-step OpenFOAM-dev installation instructions:

Installation/Linux/OpenFOAM-dev/CentOS SL RHEL/6.10 (SCL)Installation/Linux/OpenFOAM-dev/CentOS SL RHEL/6.8