TestWyldckat

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Revision as of 18:22, 11 November 2009 by Wyldckat (Talk | contribs)

Contents

1 Introduction

This is an exhaustive step by step guide on how to fully cross-compile OpenFOAM in Linux for Windows, for both 32 and 64 bits architectures (from and to), using the patches available here.

These patches were based on Symscape's "v3" patch for OpenFOAM 1.5.x available here. These differ substantially from that patch, as well as the more recent one for 1.6.x, available here. The build scripts for mingw and mingw-w64 were also based on the build-mingw script available on the 1.5.x link.

With this guide and available patches, you should be able to cross-compile the whole and complete OpenFOAM libraries and applications, using MPICH2 instead of Open MPI for parallel computing. You can cross-compile using mingw32 and/or mingw-w64. These enable you to build OpenFOAM 1.6 for Windows 32 and 64 bit versions, from Linux 32 and 64bit architectures. See the chapter Notes on what doesn't work and why, for information on things that don't work properly.

Versions these patches apply to:

OF version 16.png

2 Get OpenFOAM packages

  1. In your Linux machine, open a terminal window (example) and create the folder $HOME/OpenFOAM:
    mkdir $HOME/OpenFOAM
    cd $HOME/OpenFOAM
  2. Get OpenFOAM-1.6.General.gtgz and ThirdParty-1.6.General.gtgz from the OpenCFD's website and copy/move them to the folder $HOME/OpenFOAM. If you want direct download from the terminal, then do:
    wget http://downloads.sourceforge.net/foam/OpenFOAM-1.6.General.gtgz?use_mirror=mesh
    wget http://downloads.sourceforge.net/foam/ThirdParty-1.6.General.gtgz?use_mirror=mesh
  3. Extract both files, by running in a terminal:
    tar xzf OpenFOAM-1.6.General.gtgz
    tar xzf ThirdParty-1.6.General.gtgz

3 Things needed for properly cross-compiling OpenFOAM 1.6

  • The packages needed in Linux (these are Ubuntu package names) are: flex git git-core build-essential python-dev libqt4-dev libreadline5-dev wget zlib1g-dev texinfo byacc bison.
  • For the x86_64 Linux platform, you will also need: gcc-multilib
  • The packages required for documentation are: doxygen graphviz.

The reference script for installing most of theses packages was this.

4 Using a specific gcc version for building the wmake binaries (Optional)

This is optional, because the current patch will use the system's gcc for building them (more specifically gcc as compiler name).

  1. Edit $HOME/.bashrc and add the following line to the end of it:
    . $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc
    WARNING: sometimes the leading dot doesn't work, so use the following instead:
    source $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc
    NOTE:You might want to edit $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc and set the Linux architecture correctly, namely WM_ARCH_OPTION to 32 or 64.

  2. Two possibilities are now available:
    1. Use the system's gcc - edit $HOME/OpenFOAM/OpenFOAM-1.6/etc/settings.sh and change compilerInstall=OpenFOAM to compilerInstall=System.
    2. Or use the gcc that comes with the ThirdParty-1.6.General.gtgz package - again, two choices:
      1. You can compile the gcc by running the following line:
        (cd $HOME/OpenFOAM/ThirdParty-1.6 && makeGcc gcc-4.3.3)
      2. Or by getting the available compiled version for your Linux version ( ThirdParty-1.6.linuxGcc.gtgz or ThirdParty-1.6.linux64Gcc.gtgz from OpenCFD's website).
  3. Launch a new terminal and run the following line, thus building wmkdep and dirToString:
    (cd $HOME/OpenFOAM/OpenFOAM-1.6/wmake/src && make)

5 Applying patches

  1. Copy/move the PatchesNBatches.tar.gz file into the $HOME/OpenFOAM folder. Then unpack it by running:
    tar -xzf PatchesNBatches.tar.gz
  2. A new folder is created, named pnb. Now to apply the patches, run from the $HOME/OpenFOAM folder:
    patch -p0 < pnb/OpenFOAM-1.6_patch
    patch -p0 < pnb/ThirdParty-1.6_patch
  3. Still have to do some chmodding, for new scripts to run properly. Run the following lines in the terminal:
    chmod 744 $HOME/OpenFOAM/ThirdParty-1.6/build-mingw32
    chmod 744 $HOME/OpenFOAM/ThirdParty-1.6/build-mingw-w32
    chmod 744 $HOME/OpenFOAM/ThirdParty-1.6/build-mingw-w64
    chmod 744 $HOME/OpenFOAM/ThirdParty-1.6/build-mingw-w64-45
    chmod 744 $HOME/OpenFOAM/ThirdParty-1.6/makeGcc44
    chmod 744 $HOME/OpenFOAM/ThirdParty-1.6/get-mpich2
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/src/mingwFunctions
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/src/Allclean
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw32
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw-w32
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw-w32-prof
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw-w32S
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw-w64
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw-w64-45
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw-w64-prof
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/applications/utilities/parallelProcessing/Allwmake
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/bin/tutowin
    chmod 744 $HOME/OpenFOAM/OpenFOAM-1.6/bin/foamDiff

6 Getting Windows version of MPICH2 into the ThirdParty-1.6 folder in Linux

  1. There are two ways of getting MPICH2 into your Linux+OpenFOAM set up:
    1. Use the get-mpich2 script, that requires Wine to be installed. With Wine installed and with msiexec executable from the terminal, then the get-mpich2 script should work. To check whether you have msiexec accessible in the terminal, run:
      which msiexec
      If it returns the full path to the executable, then it is ready to use.
    2. Copy MPICH2 files from a Windows Installation. Three steps for this part:
      • Download and install in Windows the MPICH2, version 1.1.1p1 Win32 IA32 from here. Get and install the 64bit version, if you wish to build OpenFOAM for Windows x64.
      • Create the folder $HOME/OpenFOAM/ThirdParty-1.6/mpich2-1.1.1p1 in your Linux set up:
        mkdir $HOME/OpenFOAM/ThirdParty-1.6/mpich2-1.1.1p1
      • Copy the folders bin, include and lib from the installed version of MPICH2 in Windows, into the folder ThirdParty-1.6/mpich2-1.1.1 in Linux.
The Allwmake script at the folder ThirdParty-1.6 will take care of the rest. For now, the tough part is that, this way, you can only build one version of OpenFOAM (32 or 64bit) at a time.

7 Tweaking environment options

  1. Choose which version you want to use:
    mingw32: for getting a 32bit version of OpenFOAM, that builds on Linux i?86, using mingw;
    mingw-w32: for getting a 32bit version of OpenFOAM, that builds on Linux i686 and x86_64, using mingw-w64;
    mingw-w64: for getting a 64bit version of OpenFOAM, that builds on Linux i686 and x86_64, using mingw-w64;
    Variants of the "bashrc" file that is inside the folder $HOME/OpenFOAM/OpenFOAM-1.6/etc, have been created, to meet the most likely options. These are:
    sample - <bashrc-version> 
    configured for <compiler>, <mingw version>, <MPI option>, <WM_COMPILE_OPTION>, <WM_ARCH_OPTION>
    bashrc-mingw32 
    configured for gcc-4.3.3, mingw32, MPI with MPICH2, Opt, DP, 32
    bashrc-mingw-w32 
    configured for gcc-4.4.2, mingw-w32, MPI with MPICH2, Opt, DP, 32
    bashrc-mingw-w32-prof 
    configured for gcc-4.4.2, mingw-w32, No MPI, Prof, DP, 32
    bashrc-mingw-w32S 
    configured for gcc-4.4.2, mingw-w32, MPI with MPICH2, Opt, SP, 32
    bashrc-mingw-w64 
    configured for gcc-4.4.2, mingw-w64, MPI with MPICH2, Opt, DP, 64
    bashrc-mingw-w64-prof 
    configured for gcc-4.4.2, mingw-w64, No MPI, Prof, DP, 64
    bashrc-mingw-w64-45 
    configured for gcc-4.5.0, mingw-w64, MPI with MPICH2, Opt, DP, 64
  2. After choosing the version you wish to build, edit the file $HOME/.bashrc and add to the end of it, a line analogous to the following line:
    . $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw32

    WARNING: sometimes the leading dot doesn't work, so use the following instead:

    source $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw32
  3. Before launching a new terminal, edit the picked file $HOME/OpenFOAM/OpenFOAM-1.6/etc/bashrc-mingw version. You have two additional variables that are configurable and non standard to the original OpenFOAM version:
    • WM_PSTREAMLINK - this variable allows control over the linking method that is with the Pstream library. Two options are available:
      1. If set to DONTLINKTOPSTREAM, then depending on the variable WM_MPLIB being set to NONE or MPICH, then OpenFOAM will be statically linked with that version; that means that it will only run without MPI capabilities or only run with MPICH2 installed, respectively.
      2. If LINKTOPSTREAM, then DLLs of the library Pstream are created, both dummy and MPICH2 versions; this allows you to choose which version to use in Windows, without rebuilding OpenFOAM again. This way you get 2 versions of OpenFOAM with just one build, which is useful for various installation environments.
    • WM_GETMPICH2 - this variable controls whether MPICH2 is setup automatically or manually (see Getting Windows version of MPICH2 into the ThirdParty-1.6 folder in Linux). The two options are:
      1. If set to GETMPICH2, then wget is used for downloading the MPICH2 installation packages, and Wine will be used to unpack the ".msi" files.
      2. If DONTGETMPICH2, then the script will assume that MPICH2 was set up manually.
  4. Optional - If you want to use a version of MPICH2 other than 1.1.1p1, then edit the file $HOME/OpenFOAM/OpenFOAM-1.6/etc/settings.sh and find the line that has mpi_version=mpich2-1.1.1p1 and change to the version you want, as show here.

8 Build the cross compiler

  1. Open a new terminal window or tab, so the edited file $HOME/.bashrc is executed, thus setting up the chosen OpenFOAM development environment (see Tweaking environment options).
  2. Now go to the ThirdParty-1.6 folder, in your new terminal:
    cd $WM_THIRD_PARTY_DIR
  3. Now you have to build the cross-compiler. Accordingly to the version you picked, you have type one of the following versions:
    • to build the mingw32 version, run:
      ./build-mingw32 gcc-4.3.3
    • to build the mingw-w32 version, run:
      ./build-mingw-w32
    • to build the mingw-w64 version, run:
      ./build-mingw-w64
    • to build the mingw-w64-45 version, run:
      ./build-mingw-w64-45
    Alternatively, you can run:
    ./makeGcc gcc-4.3.3

    This will launch the respective build-mingw* script, according to the environment settings, but gcc-4.3.3 will only be used for mingw32; and the script build-mingw-w64-45 isn't called from makeGcc.

    NOTE: updates are bound to be done to the packages that these scripts use. Therefore, you should edit the script you have chosen, and check accordingly:

    • mingw32 - search for:
      BINUTILS_ARCHIVE="binutils-2.19.1-src.tar.gz"
      MINGW_ARCHIVE="mingwrt-3.15.2-mingw32-dev.tar.gz"
      W32API_ARCHIVE="w32api-3.13-mingw32-dev.tar.gz"
      REGEX_ARCHIVE="mingw-libgnurx-2.5.1-bin.tar.gz"
      REGEX2_ARCHIVE="mingw-libgnurx-2.5.1-dev.tar.gz"
      And check if they still exist or newer exists, on their website.
    • mingw-w?? - search for:
      MINGW64PACKAGE="mingw-w64-src_4.4.1-1"

      And check here for new versions. Usually the package is around 80MB in size. The line:

      MINGW64PACKAGE2="mingw-w64-crt-release-1.0"

      Relates to the stable run-time source version, available at cadforte. For the package mingw-w64-src_4.4.1-1, this was necessary, because this wasn't the stable version yet.

      You can change either variables; you might even want to comment MINGW64PACKAGE2 and related items to it, if you deem the package indicated in MINGW64PACKAGE to be stable enough.

9 Cross-Compile OpenFOAM in Linux for Windows

  1. Open a new terminal window or tab, so it will reset environment variables and add the newly built cross-compiling gcc into the executable path variable (see Tweaking environment options). Go to the project folder as so:
    cd $WM_PROJECT_DIR
  2. Go to the folder "OpenFOAM-1.6" and run "Allwmake":
    ./Allwmake
    This will build the entire OpenFOAM package. This does not include: Paraview, ccm26ToFoam, OpenMPI and code documentation.
  3. Optional - If you want to create a CHM file in Windows, which will have the whole documentation in a single Compressed HTML index.chm file, then copy the file at the folder pnb, as such:
    cp ../pnb/Doxyfile ./doc/Doxygen/

    Now, to recompile the code documentation, you should have added doc to ./Allwmake, as so:

    ./Allwmake doc

    Or, after ./Allwmake is all done, run:

    ./doc/Allwmake

    In the chapter Creating a Compiled HTML file for the code documentation is explained how to finish this step.

  4. Optional - To build the mesh conversion utility ccm26ToFoam, just run:
    $FOAM_APP/utilities/mesh/conversion/Optional/Allwmake
    The rest is done automatically, including downloading the libraries used for handling ccm files, and patching where necessary.
  5. Optional, but essential for testing MPICH2, as described in the chapter Using MPICH2 with OpenFOAM in Windows - Build the parallel test application:
    cd $WM_PROJECT_DIR
    wmake applications/test/parallel
    The built executable will be placed in the folder $HOME/OpenFOAM/$USER-1.6/application/bin/$WM_OPTIONS, or $FOAM_USER_APPBIN for short.

10 Copying the files to your Windows installation

  1. The folders from $HOME/OpenFOAM that you have to copy are:
    • OpenFOAM-1.6/applications/bin/$WM_OPTIONS
    • OpenFOAM-1.6/etc
    • OpenFOAM-1.6/bin
    • OpenFOAM-1.6/tutorials
    • OpenFOAM-1.6/lib/$WM_OPTIONS
    • OpenFOAM-1.6/doc (optional)
    • ThirdParty-1.6/mpich2-1.1.1p1/platforms/$WM_OPTIONS (or one of the versions you chose)
    • ThirdParty-1.6/mpich2-1.1.1p1/source (optional, only if get-mpich2 is used)
    • $USER-1.6/applications/bin/$WM_OPTIONS (created in step 5 of the chapter Cross-Compile OpenFOAM in Linux for Windows)
    You can get all of these in a nice little package, by running at $HOME/OpenFOAM:
    tar -chjf OpenFOAM.$WM_OPTIONS.tar.bz2 OpenFOAM-1.6/applications/bin/$WM_OPTIONS \
    OpenFOAM-1.6/etc OpenFOAM-1.6/bin OpenFOAM-1.6/tutorials OpenFOAM-1.6/lib/$WM_OPTIONS \
    OpenFOAM-1.6/doc ThirdParty-1.6/mpich2-1.1.1p1/platforms/$WM_OPTIONS \
    $USER-1.6/applications/bin/$WM_OPTIONS ThirdParty-1.6/mpich2-1.1.1p1/source

    Or for an even smaller package:

    tar --lzma -chf OpenFOAM.$WM_OPTIONS.tar.lzma OpenFOAM-1.6/applications/bin/$WM_OPTIONS \
    OpenFOAM-1.6/etc OpenFOAM-1.6/bin OpenFOAM-1.6/tutorials OpenFOAM-1.6/lib/$WM_OPTIONS \
    OpenFOAM-1.6/doc ThirdParty-1.6/mpich2-1.1.1p1/platforms/$WM_OPTIONS \
    $USER-1.6/applications/bin/$WM_OPTIONS ThirdParty-1.6/mpich2-1.1.1p1/source
  2. Optional - In case you have built more than one OpenFOAM version (mingw32 mingw-w32 mingw-w64), pack the whole bin and lib folders as so:

    tar --lzma -chf OpenFOAM.mingw.tar.lzma OpenFOAM-1.6/applications/bin OpenFOAM-1.6/etc \
    OpenFOAM-1.6/bin OpenFOAM-1.6/tutorials OpenFOAM-1.6/lib OpenFOAM-1.6/doc \
    ThirdParty-1.6/mpich2-1.1.1p1/platforms $USER-1.6/applications/bin
  3. In order to recreate a folder base folder similar to the Linux setup, do the following steps:
    • Copy the resulting compressed file to your Windows installation.
    • Create a folder named OpenFOAM, wherever you wish to have OpenFOAM running in Windows.
    • Copy/Move the file compressed file into that folder.
    • Unpack it using a compatible application. In case you don't know or have any, a suggestion is 7zip, available here.
  4. Unpack the PatchesNBatches.tar.gz file to your OpenFOAM base folder in Windows. The following files should be copied from the folder pnb to the base folder OpenFOAM:
    DOS_Mode.bat
    setvars.bat
    These two will help you setup the Windows Command Line environment for running OpenFOAM in Windows. Edit setvars.bat and change the lines:
    set USER=ofuser
    set USERNAME=ofuser
    to your Linux user name... Or change the $USER-1.6 you have that came from Linux, to ofuser-1.6. You can also choose which Pstream version to run. Find the following lines inside setvars.bat:
    rem PICK ONE: dummy or MPICH
    rem set WM_MPLIB=dummy
    set WM_MPLIB=MPICH
    And remove/add the comment word rem as you wish. Now, to launch the command line, simply double-click on the file DOS_Mode.bat. In case you have built more than one version, a menu will show asking which version to use.
  5. In order to get MPICH2 batch file to run in this command line, you'll have to copy the file pnb\gompi.bat to the folder OpenFOAM-1.6\bin. MPICH2 will only work properly if you install it in Windows. If you used get-mpich2 script in Linux (see Getting Windows version of MPICH2 into the ThirdParty-1.6 folder in Linux), you should have the installation file(s) in the folder ThirdParty-1.6\mpich2-1.1.1p1\source, that came with the compressed file that has the cross-compiled OpenFOAM. Now, you have (at least) two possible solutions:
    1. Replicate the structure as in Linux - After installing MPICH2 in Windows, you can copy the binary folder to the respective version of cross-compiled OpenFOAM. For example C:\Program Files\MPICH2\bin or C:\Program Files (x86)\MPICH2\bin for the 32bit version in Windows x64. The targeted folders to hold the contents of the MPICH2 bin folder, are:
      • ThirdParty-1.6\mpich2-1.1.1p1\platforms\linuxmingw32DPOpt\bin
      • ThirdParty-1.6\mpich2-1.1.1p1\platforms\linuxmingw-w32SPOpt\bin
      • ThirdParty-1.6\mpich2-1.1.1p1\platforms\linuxmingw-w32DPOpt\bin
      • ThirdParty-1.6\mpich2-1.1.1p1\platforms\linuxmingw-w64DPOpt\bin - this should have the 64bit version of MPICH2
    2. Edit the file setvars.bat and add the bin folder of your MPICH2 installation to the PATH variable near the end of the batch file. For example, add
      ;C:\Program Files\MPICH2\bin
      to the end of line that starts with:
      set PATH=%PATH%;
      CAUTION: on Windows x64, this solution will require additional tweaking to the setvars.bat, in case you want to run both versions (32 and 64bit) of OpenFOAM, in order to add
      ;C:\Program Files\MPICH2\bin
      or
      ;C:\Program Files (x86)\MPICH2\bin
      accordingly to the desired version.
  6. In order to get Paraview batch file to run in this command line, you'll have to copy the file pnb\paraFoam.bat to the folder OpenFOAM-1.6\bin. Paraview should be installed in, or copied to, one of the following folders, according to the versions installed:
    ThirdParty-1.6\paraview-3.6.1\platforms\linuxmingw32
    ThirdParty-1.6\paraview-3.6.1\platforms\linuxmingw-w32
    ThirdParty-1.6\paraview-3.6.1\platforms\linuxmingw-w64
    The Paraview binaries themselves should be inside the folder bin. For example, for mingw32 the Paraview binaries should be inside the folder ThirdParty-1.6\paraview-3.6.1\platforms\linuxmingw32\bin.
    For more information on how to build Paraview for Windows with OpenFOAM file handling, see the chapter Building Paraview in Windows.
  7. Tip: with some tweaking of the OpenFOAM scripts in the folder OpenFOAM-1.6\bin, it is possible to run OpenFOAM with MSys. This way you have more functionalities and a near Linux experience with OpenFOAM. And for MPICH2, you might want to make a copy of mpiexec.exe to mpirun.exe.

11 Building Paraview in Windows

  1. This is a pain to do, and yet, quite simple once you get the handle of it. Nonetheless, here won't be described the full building procedure. You can follow the tutorial available here in this wiki and use that plug-in for reading .foam files directly from Paraview, without building the original plug-ins that come with OpenFOAM and be able to handle large and/or parallelized cases. On that tutorial page, you also have a link to an already built version of Paraview 3.4.0 with the plug-in. This way it is less one thing to worry about building.
  2. Tips for building a 64bit version of Paraview - Follow the instructions available here and here. This way you can get Visual Studio Express to build x64 applications and also build Qt 64bit for Windows, as well as Paraview with the multi-platform plug-in!

12 Using MPICH2 with OpenFOAM in Windows

This is valid for each computer with Windows, where you installed the cross-compiled OpenFOAM. Be advised that you should install OpenFOAM in an identical folder path on each machine, or in a network shared drive. User accounts of the same name and password will reduce the complexity of your system. Currently we haven't tested running with different user accounts.

NOTE: these steps depend on the MPICH2 version you choose to run, namely 32 or 64bit. So you might need to do them every time you need different architectures. Nonetheless, the SMPD service seemed to be compatible with both versions.

The steps are:

  1. Go to into your administrative account (if your user account doesn't have administrative capabilities) and:
    1. Open a command line (Start->Run... or Winkey+R and run cmd.exe).
    2. Go to the bin folder where MPICH2 is installed (e.g. cd C:\Program Files\MPICH2\bin).
    3. Type:
      smpd -install
      to install the MPICH2 smpd service.
  2. Go back to your OpenFOAM user account.
    1. Now run the OpenFOAM terminal (double click on the file DOS_Mode.bat).
    2. Type:
      mpiexec.exe -register

      And when it asks your user name just press Enter key; and when it asks your user password, introduce your password... it'll ask you twice to make sure. This will allow future calls to mpiexec to be done without requiring password. MPICH will encrypt your password into the Windows Registry, so it should be safe.

      CAUTION: the MSys terminal version will make your password visible on screen!
    3. Test the parallel system. For that, you'll have to:
      1. In the OpenFOAM terminal, go to the folder ofuser-1.6 (or $USER-1.6) and unpack the test case PTestCase.tar.gz‎;
      2. Go into the pTestCase case folder;
      3. Type:
        gompi parallelTest
        It will test communications between two instances of parallelTest.exe. If successful, it should display something like this:
      C:\Program Files\blueCFD\ofuser-1.6\PTestCase>mpiexec -n 2 -genvlist HOME,PATH,USERNAME,
      WM_PROJECT_DIR,WM_PROJECT_INST_DIR,WM_OPTIONS,FOAM_LIBBIN,FOAM_APPBIN,FOAM_USER_APPBIN,
      MPI_BUFFER_SIZE parallelTest -parallel
      /*---------------------------------------------------------------------------*\
      | =========                 |                                                 |
      | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
      |  \\    /   O peration     | Version:  1.6                                   |
      |   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
      |    \\/     M anipulation  |                                                 |
      \*---------------------------------------------------------------------------*/
      /*   Windows 32 and 64 bit porting by blueCAPE: http://www.bluecape.com.pt   *\
      |  Based on Windows porting (1.5.x v3) by Symscape: http://www.symscape.com/  |
      \*---------------------------------------------------------------------------*/
      Build  : 1.6-f802ff2d6c5a
      Exec   : C:\Program Files\blueCFD\ofuser-1.6\applications\bin\linuxmingw-w32DP
      Opt\parallelTest.exe -parallel
      Date   : Oct 23 2009
      Time   : 16:21:16
      Host   : THE_MACHINE
      PID    : 712
      Case   : C:/Program Files/blueCFD/ofuser-1.6/pTestCase
      nProcs : 2
      Slaves :
      1
      (
      THE_MACHINE.5024
      )
      
      Pstream initialized with:
          floatTransfer     : 0
          nProcsSimpleSum   : 0
          commsType         : nonBlocking
      
      // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
      Create time
      
      [1]
      Starting transfers
      [1]
      [1] slave sending to master 0
      [1] slave receiving from master 0
      [0]
      Starting transfers
      [0]
      [0] master receiving from slave 1
      [0] (0 1 2)
      [0] master sending to slave 1
      End
      
      [1] (0 1 2)
      Finalising parallel run
      

13 Creating a Compiled HTML file for the code documentation

As described in the chapter Cross-Compile OpenFOAM in Linux for Windows, you can created a Compiled HTML file of the code documentation, from the Doxygen files re-compiled in that chapter. Keep in mind that this is an optional feature. The code documentation can prove useful in situations where the manuals prove to be insufficient to explain the more intrinsic details about the case dictionaries.

  1. When you packed the files for transport from Linux to Windows (see Copying the files to your Windows installation), you should have included the OpenFOAM-1.6/doc folder, and it should be available in your Windows installation. So, check if you have the files index.hhp, index.hhc and index.hhk in the folder OpenFOAM-1.6\doc\Doxygen\html. If:
  2. Get and install the HTML Help Workshop, which is available here, so you can use it to compile the HTML files into a single CHM file.
  3. Now launch the OpenFOAM Command Window (run DOS_Mode.bat). Do:
    cd OpenFOAM-1.6\doc\Doxygen
    subst K: .

    This will make the folder OpenFOAM-1.6\doc\Doxygen be also a virtual drive, letter K. Use another letter if that is already occupied. Don't close the command window.

    NOTE:This step is required, because HTML Help Workshop is a very old application (copyright 1996-1999) and is very picky and simple application. So long path names aren't very tolerable.

  4. Launch the application HTML Help Workshop from Windows. On the window HTML Help Workshop, go to the menu command File->Open and open the file K:\html\index.hhp.
  5. Optional - you can change the target path and name for the index.chm file in the left side bar, that appears when you open the project. Double click on the line Compiled file=index.chm. As said before, keep paths simple. Best advice would be ..\index.chm, since it is a short relative path, and will be away from the +46700 files that exist inside the html folder.
  6. Run the Compile command (File->Compile). It will take some time to compile. Hopefully it won't crash.
  7. If it hasn't crashed, then you will have a brand new 74MiB [1] index.chm file, with added index and search functions. NOTE: the Search for edit box in the top right of the page won't work. Use the left side bar that comes with the index.chm help window.
  8. Cleaning up:
    • In the Command Window that you opened a while ago, remove the virtual drive letter, by running:
      subst K: /D
      You can now close that command window.
    • Copy the index.chm file to a safe place, and remove the html folder in OpenFOAM-1.6\doc\Doxygen. WARNING: to remove the +46700 files that exist therein, will take a very long time.

14 Notes on what doesn't work and why

14.1 chtMultiRegionFoam can't work properly

The solver chtMultiRegionFoam doesn't work properly on Windows, due to a file name conflict of k and K. The field name K is hard-coded in the executable, and it isn't changeable via the case files changeDictionaryDict.

Solution: use preprocessors in the chtMultiRegionFoam code (search for "K" in all files, and change only those referencing to field creation or reading) and use the macros WIN32 and WIN64 to set apart the renaming of K to KK or Ksolid... or something like that. Then you can change the references to K in the files changeDictionaryDict of the chtMultiRegionFoam cases. Should be implemented in a future patch version for OpenFOAM 1.6.x.

14.2 motorBike case and foamToVTK in Windows

If you want to use foamToVTK on the tutorial case motorBike, you will have to run the script fixToWindows available at the motorBike case, so it can fix the surface names with "%" in the STL file and in some of the case dictionaries. The script can be executed on MSys or on Linux.

14.3 motorBike case in the package OpenFOAM-1.6.General.gtgz doesn't work well

The motorBike case available with the original 1.6 package doesn't work properly. These patches will not fix it. Please get the OpenFOAM 1.6.x git version, if you want a working motorBike case.

14.4 foamToVTK made .vtk files that Paraview can't read

This is likely still a bug that occurs in creating binary VTK files in Windows. Please use the switch -ascii for creating these files:

foamToVTK -ascii

Additionally, sometimes the folder 0 (the start time for the simulation), doesn't have valid mesh information. For these situations, use the switch -time or -latestTime, for retrieving specific time snapshots. For example, for 500s, use:

foamToVTK -time 500

For the latest time snapshot, use:

foamToVTK -latestTime

14.5 Can't build cross-compiler version mingw32 in Linux x86_64

With the build script for mingw32, that comes in these patches, can't build its cross-compiler under Linux x86_64.

Solution: please use the mingw-w32 version, or try to fix the build-mingw32 script yourself!

14.6 libscotch is limited in Windows

The library libscotch can't handle compression in Windows, due to nonexistent native Windows pipe and fork functions. MSys and Cygwin have these implemented, but effort has not been invested in re-implementing them here.

14.7 Fast memory allocation issues in Windows

Hoard and fbsdmalloc are not enabled for the mingw versions.

Solution:There is a native build winhoard library online, but effort was not put into this for now. An implementation of fbsdmalloc wasn't found for mingw nor native Windows.

14.8 Symbolic links in the tutorials

To copy the tutorials properly to Windows, use the command:

tar -chjf ../tutorials.tar.bz2 tutorials

at the folder $HOME/OpenFOAM/OpenFOAM-1.6. The h switch will make copies of the symbolically linked folders and files, thus removing the symbolic links. You can then uncompress the tutorials.tar.bz2 file in your Windows installation.

14.9 Building OpenFOAM with gcc-4.4.? and gcc-4.5.0

To get OpenFOAM to build with gcc-4.4.? and gcc-4.5.0, I used the information available here.

14.10 Open MPI in Windows

Building Open MPI with the mingw cross-compilers was not tested. References to it currently running in Windows using mingw have not been found.

Solution: For MPI functionality, MPICH2 is used in these patches.

14.11 Cross-compiled version mingw-w64 takes longer to start applications

After some investigation, it seems that due to mingw-w64 still being in fierce development (still considered somewhat like beta), the mingw-w64 version of OpenFOAM takes about 12 seconds (much more if executed in virtual machines) to start each application in Windows x64. The 32bit versions take 3 seconds or less, depending the machine type (virtual or real). During that period, the Task Manager shows that the memory is being slowly filled. Profiling blockMesh was also tested, to try to isolate the problem (see Profiling OpenFOAM applications with mingw cross-compiled version), but the statically built profiling version of blockMesh, booted in less than a second. So, there are at least two possible of the conclusions:

  • The OpenFOAM libraries do some matrix allocations and/or re-allocations, when they are loaded by the applications;
  • The mingw-w64 version still has issues with loading multiple DLLs from within DLLs and all that...

14.12 Some tutorials don't work in Windows

Some tutorials require building auxiliary executables or libraries. These have to be cross-compiled in Linux.

OF version 16.png The tutorials are:
incompressible\MRFSimpleFoam
incompressible\simpleSRFFoam
lagrangian\rhoPisoTwinParcelFoam
basic\potentialFoam\cylinder
compressible\rhoCentralFoam\biconic25-55Run35
heatTransfer\buoyantPisoFoam\hotRoom
multiphase\interFoam\MRFInterFoam
multiphase\interDyMFoam\ras\sloshingTank3D6DoF

14.13 Tutorial scripts don't work in Windows

Actually, they work, but only if you use the MSys terminal. If you want to stick to the Windows Command Line, then use the sh.exe executable that comes with MSys (should be visible in the search PATH, i.e., add the MSys bin folder to the setvars.bat file). For example, running the Allrun script in a tutorial case, do like so:

sh Allrun

15 Notes on added functionalities with these patches

15.1 Building ccm26ToFoam

ccm26ToFoam builds properly with these patches, because the fixes in the git version are also in these patches; the missing Make files for the ccm26io library are also in a patch file created in the ThirdParty-1.6 folder. The Make files came from this post. To build ccm26ToFoam, run the script in Linux:

$FOAM_APP/utilities/mesh/conversion/Optional/Allwmake

15.2 Keeping track of symbolic links in tutorials

Running the script tutowin at the folder $HOME/OpenFOAM/OpenFOAM-1.6, you will be shown the tutorial folders that are symbolically linked. Use this list as a reference to where you should create README files, indicating where folders will be copied from. For the tutorials available in the OpenFOAM 1.6, this is already done by these patches. So you can use tutowin for future updates.

15.3 Changes in settings.sh

The script settings.sh has been modified quite a bit. The platform build names for gcc have been changed to include the architecture, and gcc-4.4.2 has been added to the list of compilers. The dummy libPstream has been added as an MPI library named NONE, so libPstream will be added to the library search path.

15.4 Building locally with multiple cores

The bashrc-* scripts have integrated in them the automatic selection of how many cores to use to build. This was copied from the makeGcc build script available in the $HOME/OpenFOAM/ThirdParty-1.6.

15.5 Building mingw cross-compilers

Build scripts have been added to the folder $HOME/OpenFOAM/ThirdParty-1.6, to aid in building mingw32, mingw-w32 and mingw-w64 cross-compilers.

15.6 Getting MPICH2 automatically in Linux

A script named get-mpich2 for retrieving and extracting MPICH2 has been added. It will require that you install Wine, in order to use msiexec to extract the MPICH2 install packages. Otherwise, you will have to install firstly in Windows and copy the files to your Linux+OpenFOAM setup (see Getting Windows version of MPICH2 into the ThirdParty-1.6 folder in Linux).

15.7 Compiling HTML files into CHM

Doxyfile is available as a separate file, inside the package PatchesNBatches.tar.gz. See chapter Creating a Compiled HTML file for the code documentation for more information.

15.8 Creating new patches

$HOME/OpenFOAM/OpenFOAM-1.6/bin/foamDiff is a script created specifically for creating these patches, without requiring to cleanup the binaries and lnIncludes. It requires that you have a second mint condition folder with the original files. In other words, your $HOME/OpenFOAM folder should have, for example, the folders:

OpenFOAM-1.6
OpenFOAM-1.6-orig
ThirdParty-1.6
ThirdParty-1.6-orig

Then use foamDiff from the folder $HOME/OpenFOAM as so:

foamDiff OpenFOAM-1.6 OpenFOAM-1.6-orig OpenFOAM-1.6_patch_new
foamDiff ThirdParty-1.6 ThirdParty-1.6-orig ThirdParty-1.6_patch_new

Legend: foamDiff <FolderNew> <FolderOrig> <patch_name>

15.9 MPFR 2.4.1 was missing 3 files

The mpfr-2.4.1 folder that comes with the original ThirdParty-1.6.General.gtgz package is missing 3 files: log2.c, log1p.c and log10.c. These are added by the patches.

15.10 Profiling OpenFOAM applications with mingw cross-compiled version

Profiling with mingw isn't as clean as with Linux, since mingw doesn't support DLL profiling. So some tweaks have been made to make it possible to build fully static executables... but for now, only blockMesh and potentialFoam are working with the Prof option. See the options file in the Make folder on each of these application source code folders, to see what needs to be done on the other applications.

16 Miscellaneous information

16.1 Differences between mingw32 and mingw-w32 versions

MinGW is the true name of mingw32. As for mingw-w32 (32bit version of mingw-w64), as cited from here:

Mingw-w64 began as a spin-off from the mingw.org project, with the original intent of building for 64-bit targets.

Nonetheless, mingw-w64 still has retro-compatibility with the 32bit MinGW version, thus enabling a 2-in-1 build package for 32 and 64bit Windows systems.

The main difference between mingw32 and mingw-w32, is that MinGW is a stable and proven build tool and run-time for Windows, while the mingw-w64 project is still under fierce development and has only recently (20091029) released their first stable version. Therefore, it is only estimated that the mingw32 version should provide less headaches than mingw-w32.

17 Other Important Links

This is a list of links of build instructions of cross-compiled and natively compiled versions of OpenFOAM, using mingw and/or mingw-w64:

  • Symscape's cross-compiled OpenFOAM 1.4.1 mingw32 version [2]
  • Symscape's cross-compiled OpenFOAM 1.5.x mingw32 version [3]
  • blueCAPE's cross-compiled OpenFOAM 1.5.x mingw32 version with MPICH1 [4] and MPICH2 [5]
  • Julian's OpenFOAM 1.5 files for native build in Windows [6] with mingw32 and CodeBlocks (instructions included inside files)
  • Symscape's cross-compiled OpenFOAM 1.6.x mingw32 version [7]
  • blueCAPE's cross-compiled OpenFOAM 1.6 mingw32, mingw-w32 and mingw-w64... is this tutorial you are reading...

Distributable binaries:

  • Free: Julian's OpenFOAM for MS windows binary release by - OpenFOAM 1.5 built nativelly in Windows [8] using mingw32 and CodeBlocks
  • Paid: Symscape's OpenFlow: OpenFOAM for Windows [9]
  • Paid: blueCAPE's blueCFD: OpenFOAM for Windows XP and Vista, both 32 and 64bit [10]

Benchmarks and run-times running OpenFOAM cross-compiled with mingw:

  • OF version 141.png icoDyMFoam (movingCone) OpenFOAM tutorial [11]
  • OF version 141.png Xoodles pitzDaily3D OpenFOAM tutorial [12]
  • OF version 16.png simpleFoam motorBike OpenFOAM tutorial [13]

18 History

Wyldckat 18:21, 11 November 2009 (UTC) - First version of this step by step wiki page